| # Data licenses and attribution |
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| This repository aggregates transformed records from multiple sources. It does not replace or override upstream terms. |
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| | Files | Source | Terms / attribution | |
| | --- | --- | --- | |
| | `processed/sciplex3_all.pt` | SciPlex3, GSE139944; harmonized by scPerturb | Cite Srivatsan et al. (2020) and scPerturb; retain the scPerturb Zenodo record's CC BY 4.0 attribution | |
| | `processed/cd34_all.pt` | GSE306429, ILD1-011 CD34+ | Cite GSE306429 and its associated publication; NCBI policies and submitter terms apply | |
| | `processed/frangieh_hvg.npz` | Frangieh et al. (2021), SCP1064; harmonized by scPerturb | Cite Frangieh et al. and scPerturb; retain the scPerturb Zenodo record's CC BY 4.0 attribution | |
| | `annotation/drug_annotation_master.csv` | SciPlex3, ChEMBL, PubChem and DrugCentral | Retain source attribution; ChEMBL portions are CC BY-SA 3.0 and DrugCentral portions are CC BY-SA 4.0 | |
| | `annotation/drugcentral_target_annotations.parquet` | DrugCentral | CC BY-SA 4.0; cite DrugCentral | |
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| Source pages: |
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| - SciPlex3 GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139944 |
| - CD34+ GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306429 |
| - Frangieh Broad SCP: https://singlecell.broadinstitute.org/single_cell/study/SCP1064 |
| - scPerturb Zenodo: https://doi.org/10.5281/zenodo.13350497 |
| - ChEMBL licensing: https://www.ebi.ac.uk/chembl/ |
| - DrugCentral licensing: https://drugcentral.org/privacy |
| - PubChem usage information: https://pubchem.ncbi.nlm.nih.gov/docs/programmatic-access |
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| PopRetrieve's original selection, normalization, packaging and documentation are provided for research reproducibility. No additional rights are granted over upstream data. |
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