SimpleFoldData — collection and curation progress
Updated 2026-10-14T13:03:54+00:00. Target: 1,000,000 distinct sequences with validated structures.
Status: release complete.
| Measure | Count |
|---|---|
| Target distinct sequences | 1,000,000 |
| Author AFESM clusters indexed | 2,036,414 |
| Author AFESM-E membership rows indexed | 8,616,595 |
| Author SwissProt IDs indexed | 269,003 |
| Coordinate-qualified candidates (before global deduplication) | 1,671,219 |
| Final selected unique sequences | 1,000,000 |
| Selected structures uploaded | 1,000,000 |
| Sequences embedded | 60 |
| Embedding bytes stored | 156,194,104 |
Source catalog counts are not counts of retrieved or training-ready structures. Candidate counts precede global sequence deduplication.
Active stages
- Author inventory: author_inventory_complete; swissprot_author_rows=269,003, afesm_author_rows=2,036,414, targets=2,305,417, clusters=2,036,414, memberships=8,616,595, afesm_representatives_unmapped=0, members_with_multiple_clusters=0
- SwissProt: complete; coordinate_qualified=263,278, confidence_rejected=5,698, absent_from_available_archive=27
- AFESM (superseded): superseded; coordinate_qualified=4,477, source_unavailable=403, confidence_rejected=46, validation_rejected=2
- AFDB bulk: complete; coordinate_qualified=1,214,204, validation_rejected=464,863
- PDB: batch_complete; entry_processed=163,197, coordinate_qualified=457,015, validation_rejected=22
- Final curation: complete
- Upload: swissprot_candidates_uploaded
- ESM-C 6B embeddings: pilot_complete
Scope
The source pool retains original IDs, cluster assignments, source versions, sequence and coordinate hashes, confidence values, and rejection reasons. It has no benchmark-specific contamination exclusions. Full-chain coordinate identity is checked independently from full biological parent identity; fragments remain explicitly identified.
Jobs
JobID|State|Elapsed|ExitCode
1320364|COMPLETED|00:01:27|0:0
1320364.batch|COMPLETED|00:01:27|0:0
1320364.extern|COMPLETED|00:01:27|0:0
1320405|COMPLETED|00:04:15|0:0
1320405.batch|COMPLETED|00:04:15|0:0
1320405.extern|COMPLETED|00:04:15|0:0
1320495|COMPLETED|00:01:05|0:0
1320495.batch|COMPLETED|00:01:05|0:0
1320495.extern|COMPLETED|00:01:05|0:0
1320498|COMPLETED|00:00:42|0:0
1320498.batch|COMPLETED|00:00:42|0:0
1320498.extern|COMPLETED|00:00:42|0:0
1320523|COMPLETED|00:00:43|0:0
1320523.batch|COMPLETED|00:00:43|0:0
1320523.extern|COMPLETED|00:00:43|0:0
1320537|COMPLETED|00:02:11|0:0
1320537.batch|COMPLETED|00:02:11|0:0
1320537.extern|COMPLETED|00:02:11|0:0
1320554|CANCELLED by 21014|00:31:03|0:0
1320554.batch|CANCELLED|00:31:03|0:15
1320554.extern|COMPLETED|00:31:03|0:0
1320625|COMPLETED|09:02:24|0:0
1320625.batch|COMPLETED|09:02:24|0:0
1320625.extern|COMPLETED|09:02:24|0:0
1321100|COMPLETED|00:41:25|0:0
1321100.batch|COMPLETED|00:41:25|0:0
1321100.extern|COMPLETED|00:41:25|0:0
1321145|COMPLETED|01:08:29|0:0
1321145.batch|COMPLETED|01:08:29|0:0
1321145.extern|COMPLETED|01:08:29|0:0
1337783|PENDING|00:00:00|0:0
Next hourly update scheduled; remaining updates: 149.