| # SimpleFoldData — collection and curation progress |
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| Updated **2026-10-14T13:03:54+00:00**. Target: **1,000,000 distinct sequences with validated structures**. |
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| Status: **release complete**. |
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| | Measure | Count | |
| |---|---:| |
| | Target distinct sequences | 1,000,000 | |
| | Author AFESM clusters indexed | 2,036,414 | |
| | Author AFESM-E membership rows indexed | 8,616,595 | |
| | Author SwissProt IDs indexed | 269,003 | |
| | Coordinate-qualified candidates (before global deduplication) | 1,671,219 | |
| | Final selected unique sequences | 1,000,000 | |
| | Selected structures uploaded | 1,000,000 | |
| | Sequences embedded | 60 | |
| | Embedding bytes stored | 156,194,104 | |
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| Source catalog counts are not counts of retrieved or training-ready structures. Candidate counts precede global sequence deduplication. |
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| ## Active stages |
|
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| - **Author inventory:** author_inventory_complete; swissprot_author_rows=269,003, afesm_author_rows=2,036,414, targets=2,305,417, clusters=2,036,414, memberships=8,616,595, afesm_representatives_unmapped=0, members_with_multiple_clusters=0 |
| - **SwissProt:** complete; coordinate_qualified=263,278, confidence_rejected=5,698, absent_from_available_archive=27 |
| - **AFESM (superseded):** superseded; coordinate_qualified=4,477, source_unavailable=403, confidence_rejected=46, validation_rejected=2 |
| - **AFDB bulk:** complete; coordinate_qualified=1,214,204, validation_rejected=464,863 |
| - **PDB:** batch_complete; entry_processed=163,197, coordinate_qualified=457,015, validation_rejected=22 |
| - **Final curation:** complete |
| - **Upload:** swissprot_candidates_uploaded |
| - **ESM-C 6B embeddings:** pilot_complete |
| |
| ## Scope |
| |
| The source pool retains original IDs, cluster assignments, source versions, sequence and coordinate hashes, confidence values, and rejection reasons. It has no benchmark-specific contamination exclusions. Full-chain coordinate identity is checked independently from full biological parent identity; fragments remain explicitly identified. |
| |
| ## Jobs |
| |
| ```text |
| JobID|State|Elapsed|ExitCode |
| 1320364|COMPLETED|00:01:27|0:0 |
| 1320364.batch|COMPLETED|00:01:27|0:0 |
| 1320364.extern|COMPLETED|00:01:27|0:0 |
| 1320405|COMPLETED|00:04:15|0:0 |
| 1320405.batch|COMPLETED|00:04:15|0:0 |
| 1320405.extern|COMPLETED|00:04:15|0:0 |
| 1320495|COMPLETED|00:01:05|0:0 |
| 1320495.batch|COMPLETED|00:01:05|0:0 |
| 1320495.extern|COMPLETED|00:01:05|0:0 |
| 1320498|COMPLETED|00:00:42|0:0 |
| 1320498.batch|COMPLETED|00:00:42|0:0 |
| 1320498.extern|COMPLETED|00:00:42|0:0 |
| 1320523|COMPLETED|00:00:43|0:0 |
| 1320523.batch|COMPLETED|00:00:43|0:0 |
| 1320523.extern|COMPLETED|00:00:43|0:0 |
| 1320537|COMPLETED|00:02:11|0:0 |
| 1320537.batch|COMPLETED|00:02:11|0:0 |
| 1320537.extern|COMPLETED|00:02:11|0:0 |
| 1320554|CANCELLED by 21014|00:31:03|0:0 |
| 1320554.batch|CANCELLED|00:31:03|0:15 |
| 1320554.extern|COMPLETED|00:31:03|0:0 |
| 1320625|COMPLETED|09:02:24|0:0 |
| 1320625.batch|COMPLETED|09:02:24|0:0 |
| 1320625.extern|COMPLETED|09:02:24|0:0 |
| 1321100|COMPLETED|00:41:25|0:0 |
| 1321100.batch|COMPLETED|00:41:25|0:0 |
| 1321100.extern|COMPLETED|00:41:25|0:0 |
| 1321145|COMPLETED|01:08:29|0:0 |
| 1321145.batch|COMPLETED|01:08:29|0:0 |
| 1321145.extern|COMPLETED|01:08:29|0:0 |
| 1337783|PENDING|00:00:00|0:0 |
| ``` |
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| Next hourly update scheduled; remaining updates: 149. |
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